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Secondly, we have used a bioinformatics approach to discover new patterns of expression.
However, not all environmental adaptations involve changes in protein structure, as genes can alternatively evolve new patterns of expression.
In addition to describing new patterns of expression for known small RNAs in each of these classes, we identified 7 putative novel microRNAs.
The combination of gene duplication followed by both sequence divergence and acquisition of new patterns of expression likely plays a role in the adaptation of Tetrahymen a to its environment.
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Increasing the amount of consensus clusters beyond 12 did not reveal new patterns of expressions but rather breaks down the existing time profiles into sub-categories with very similar features.
Based on this data, we suggested that acquiring a new pattern of expression could be required to maintain a duplicate copy of certain genes in the genome.
Genes captured by helitrons and relocated to a new genomic neighborhood in maize show novel patterns of expression (Barbaglia et al. 2012).
It has been proposed that epigenetic modifications of the fetal genome establish new patterns of gene expression that reset the metabolic state that is maintained into adulthood [12].
It has been suggested that transposition may be beneficial by promoting new patterns of gene expression that could lead to evolutionary bursts [ 11].
Transposition of both DNA transposons and retrotransposons can also have beneficial effects: e.g. by promoting new patterns of gene expression [ 85], and even contributing to evolutionary bursts and speciation [ 86].
Second, during lineage commitment in gastrulation and organogenesis, new patterns of gene expression are established, which include the lineage-specific selection of certain genes to be epigenetically maintained in the active state.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com