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Open image in new window Figure 4 Derived allele frequency spectrum of SNPs under positive selected and neutral selections (modified from Zhao et al., 2013).
Although γ-MYN performs in a very similar way as MYN does, it is obviously better than YN under either positive or neutral selections.
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Excess dS (ω < 1) indicates that selection favors substitutions that conserve the amino acid sequence (purifying selection), while equal dS and dN (ω = 1) illustrates relaxed selective constraints (neutral selection).
Finally, we selected sixteen microsatellites with high polymorphism, stability, and conformity with neutral selection for our research (Additional file 1: Table S1).
Note that this is a vendor neutral selection process and hiring managers will no longer see the name of the supplier on a resume.
Ka/Ks < 1 indicates purifying selection on the gene pairs, Ka/Ks = 1 indicates neutral selection, and Ka/Ks > 1 indicates that the gene pairs are under positive selection38.
For a neutral selection of the coefficients of the differences, we use Eq. (5) in this study.
Ka/Ks = 1 is referred to as "neutral selection", meaning that natural selection does not have any forces acting on the protein (Hurst [2002]).
Values significantly ≪1.0 indicate purifying selection, whereas neutral selection theoretically yields a value of ∼1.0.
The Dn/Ds ratio of the concatenated MLST sequences yielded 0.0588, indicating neutral selection.
Dn/Ds < or = 1 indicates purifying or neutral selection, favouring amino acid substitutions [26].
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