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Median-joining haplotype networks were constructed using Network version 4.2.0.1 http://www.fluxus-technology.com.com
Median-joining networks were constructed using Network version 4.1.1.2 or 4.5.1.0 (Bandelt et al., 1999).
A Median-Joining (MJ) network of haplotypes was constructed with NETWORK version 4.5.10 [ 54] software to investigate breed relationships.
The hypothetical human ancestral sequence (ANC) was derived based on the comparison between human and chimpanzee genome sequences as described by Lo et al. [11] The genetic relationships between the inferred haplotypes were generated by NETWORK version 4.5 [45], using the phylogenetic median-joining network algorithm.
To visualize the relationship among haplotypes, a network was constructed as described by [ 49] using NETWORK version 4.2.0.1.
A median-joining network [ 35] was built for each gene with the program NETWORK version 4.510 http://www.fluxus-engineering.com/ to display relationships among the coding haplotype sequences.
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