We show evidence that all networks of modules are able to process and maintain patterns of activity associated with the stimulus after its offset.
The XML descriptions of individual modules, or networks of modules, may be constructed, edited and revised directly within the LONI Pipeline graphical user interface, as well as saved or loaded from disk, URL or the LONI Pipeline server.
We refer to modules in a meta-network of modules as meta-modules.
We predicted a module network of 43 modules of co-expressed genes with their associated high-scoring regulators.
The LeMoNe algorithm, starting from an expression data matrix and a list of candidate regulators, will produce a module network, composed of modules of co-expressed genes and their associated regulators.
Determination of a hierarchy of higher level networks: We note that a higher level network of the modules of Step 3 can also be constructed, where each former module is a node of this higher level network.
The main idea is to facilitate an interoperable hierarchical network of ontology modules.
We generated a network of 10 modules with 10 nodes each.
These two workflows converged to produce a phase-specific network of regulatory modules.
