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Network depictions were constructed using Cytoscape (Shannon et al. 2003).
Network depictions show the 250 strongest reciprocal within-module gene-gene interactions (connections) as measured by TO.
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Experimentally and computationally derived networks, such as protein-protein interaction networks, regulatory networks or metabolic networks, provide static depictions of the dynamically changing cellular environment.
Even the most complex network charts or depictions of signalling hub collections and their connections still resemble the drawings primary school children in their simplicity.
Graphical depiction and network analyses were performed on a MacBook Pro 8 Gb i7.
Figure 1 Unit molecular network structure and schematic depiction of PE particles.
From a purely statistical standpoint, it is best to regard a gene regulatory network as a convenient depiction of the true regulatory interactions of a system that, in reality, must be estimated from data.
Using the mixture Bayesian network approach, the first depiction of general and condition-specific gene profiles and interactions in the adherens junction pathway of mouse embryos was obtained.
Even though all-to-all connectivity was calculated to estimate graph theoretical measures, the 3-dimensional depiction of network effects in time frequency and grid space yielded a high-dimensional feature space that had to be reduced.
Networks allow the depiction of conflicting signals from phylogenetic trees that are otherwise ignored when striving for a strict bifurcating species tree (Bapteste et al. 2013).
Figure 1B,C shows a close-up and a schematic depiction of the network of residues in the active site, respectively, and Figure 1D depicts the reaction catalyzed by AP.
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