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In addition, the repair-patch sizes of NER events are typically around 25 to 30 nucleotides, which is within the range of a single nucleosome, whereas HR involves DNA end-resection and resynthesis of hundreds to thousands of base pairs; therefore it is likely that the latter repair pathway requires more robust chromatin remodeling.
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The gene/protein NER, event extraction and negation/speculation detection components were evaluated against a corpus based on the BioNLP'09 and GENIA corpora (described in the following paragraph).
As expected, we find that for both gene/protein NER and event extraction, the intersection of multiple tools shifts the balance towards increased precision while the union favours increased recall.
There exist two distinct modes for the detection of DNA damage within NER global genomic NER (GG-NER) and transcription coupled NER (TC-NER).
Processing is performed in four stages: NER, grammatical parsing, event extraction and contextualization.
In addition, in Tables 1 and 2 NER-related chromatin remodelling events are summarized and compared with these events during transcription.
Most likely, yeast SWI/SNF is recruited to DNA lesions by binding to the Rad4-Rad23 complex, which is an early event in NER.
Here I present a comprehensive study on the semantic entities included in the gold-standard corpora which have been annotated for the named-entity recognition (NER), relationship extraction and event extraction tasks.
The system consists of four main stages: topic classification, named entity recognition (NER), disease/location detection and event recognition.
Two subpathways of NER exist: global genome NER (GG-NER) and transcription-coupled NER (TC-NER).
Overall, we observed that many FPs and FNs that occurred in the NER stage are propagated to the event extraction stage, and additional FPs and FNs introduced there are in turn propagated to the context association stage.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com