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In addition, a variable node can send a message to a factor node after it has received incoming messages from all other neighboring factor nodes.
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hudR encodes a transcription factor that represses expression of the neighboring gene hudA, which is involved in ubiquinone biosynthesis.
The validated genes were investigated for HMR (human, mouse, rat) conserved transcription factor binding sites within the nearest neighboring gene upstream to the nearest neighboring gene down-stream of the respective strand.
Certain transcription factors probably bind to the motifs to change neighboring gene expression profiles.
This question can be extended to all of the CTCF-mediated features: Are all of these functions realized at each of the 30,000 genomic binding sites (Cuddapah et al. 2009) or to which extent, are binding site-specific functions mediated by the DNA sequence or by neighboring factors?
Do chromosomal TAS modules appear to act as carriers or guardians of neighboring "fitness factor" genes that ultimately benefit their host cells?
NF-Y may cooperate with transcriptional cofactors or neighboring transcription factors in modulating gene transcription.
An active release of the Ytm1-Erb1-Nop7 sub-comayex may weaken the interaction of neighboring biogenesis factors to the pre-ribosomal particle and thus facilitate their displacement or replacement by other factors.
However, it is important to note that the 59 bp deletion downstream of the P2 transcriptional start site may have affected binding of neighboring regulatory factors or their relative spacing to each other.
A certain latent variable z i (t ) depends on neighboring pairwise factors N i, t−1) from the previous snapshot and N i, t+1) from the subsequent snapshot.
Your work focuses on the functional roles of the lncRNA Dali and its regulation not only of its neighboring transcription factor gene Pou3f3, but importantly also at distal sites through the methylation of these sites.
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