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A Z-DOPE score below −1.0 indicates high structural overlap to the native structure.
The native structure, determined by molecular replacement, revealed no significant structural distortion caused by iodotyrosine incorporation.
However, native structure of OmpA remains controversial.
The parameters are changed systematically until the model native structure converges as closely as possible to the correct native structure.
Its native structure consists of a trimeric β-hairpin propeller.
Many of them result in loss of native structure.
The larger the Z-score, the better the potential is in discriminating the native structure.
In all the other cases the native structure is among the best.
These decoys have a different tertiary arrangement with respect to the native structure.
For each feature there is one "native" value: the one found in the native structure.
Strikingly, BACH has the lowest sorted rank, namely the best performance in discriminating the native structure from the decoys.
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