The native data format for SNAVI conforms to a specified format (Table 1) and these files are called "sig" files.
The model was refined with the 1.7 Å resolution "native" data set for the inhibitor complex using the programs SHELX (31) and CNS (32).
Crystals were flash frozen in liquid nitrogen and native data sets for each crystal were collected at 100K [Diamond Light Source, Harwell (beamlines I02, I03, I04 or I04-1), or the ESRF, Grenoble (beamline ID29)].
We can see that automatic ARIMA modeling-based data aggregation scheme transmits much less number of messages than native data aggregation scheme for most of the times.
After most of the model was built, native data was used for the final rounds of model building and refinement using Coot (Emsley et al., 2010) and Phenix (Adams et al., 2010).
A new release of the well-known database management system, PostgreSQL, has been recently developed in 2013 to add HyperLogLog data structures as a native data type (see [13] for more details).
The native data set was used for the refinement.
Using this as initial model for native data sets, a higher resolution structure was solved by molecular replacement in PHASER.
Crystals grown in the Morpheus Screen (Molecular Dimensions, UK) condition H3, (0.02 M sodium l-glutamate, 0.02 M dl-alanine, 0.02 M glycine, 0.02 m dl-lysine, 0.02 M dl-serine, 0.1 M MES/imidazole [pH 6.5], 10% [wt/vol] PEG 4000, 20% [vol/vol] glycerol), which served as the cryoprotectant also, were used for native data collection.
After 106 such randomizations, the associated p-values were estimated by calculating the fraction of times an ICC value that is greater than or equal to the one for the native data set appeared in the distribution of ICCs for randomized sets.
