In NTC, a novel metric named "redundancy ratio" is introduced within the anti-entropy message exchange process.
After gene and protein names have been identified, the respective EntrezGene IDs are determined, which eliminates naming redundancies.
DNS is designed to allow multiple name servers for redundancy and improved performance.
Hence, we name our protocol Redundancy Reduced Gossip (RRG).
The intent of the grapevine nomenclature standardization is, taking into account the accumulated experience from other species and in grapevine, to clear up gene name confusion and redundancy.
Thus, we converted the accession numbers in the database to gene names (symbols) and removed the redundancy of gene names that resulted from multiple protein isoforms in each proteome set.
There are computationally challenging issues with regards to accurately classifying such data, and which due to dimensionality, noise and redundancy, to name a few.
For instance, redundancy, variable names, commenting and decomposition will not impact your score.
Party leaders won't "like the bios" coming out of GOP Headquarters and Fox News (if those two names aren't a redundancy).
Words that represent homology scoring or redundancy in naming, such as "putative", "family", "protein", etc. are also removed for this evaluation; however, these annotations are maintained in the database.
We used a publicly available list of 6,534 tissue-specific gene names (under Tissue-Specific Genes based on Expressed Sequence Tags (ESTs)) from the TiGER database (gene names were sorted and redundancy was removed - Additional file 10) and we searched for their promoters in the Eukaryotic Promoter Database in which we found 2,369 promoters.
