Therefore sRNAs imported into our database from the literature cannot always be unambiguously distinguished by name, locus or annotation only.
A table was dedicated to store the basic gene-related information including the gene name, locus and transcript details.
2. Genes: Gene ID on NCBI database, gene name, locus tag, coordinates of gene start and end.
Users have the option to run a quick search for gene name, locus name, protein name, ontologies, pathway, reaction or compound or run an advanced search where several options are available such as DNA binding sites, regulation and citations.
When a false positive is an essential gene, '−1' in the HT column is replaced by the abbreviated gene name (locus).
Additional file 1: Additional data file showing the unified nomenclatured gene name, locus ID and detailed genomic information of plant MAPKs.
Additional file 9: The nomenclatured gene name, locus ID and intron number of MAPK cascade genes from cucumber, Arabidopsis and rice.
Comprehensive information on these 11 CpARF genes, including gene name, locus ID, open reading frame (ORF) length, number of introns, location on supercontigs and deduced polypeptide sequences, is presented in Table 1.
Their gene name, locus ID, the accession numbers for coding sequences (CDSs), genomic DNA, cDNA, and predicted isoelectric points of all the 114 OsGELP genes are listed in Additional file 1.
For each chromosome, a linkage-map file comprised three columns, namely locus name, male cM location and female cM location.
