This is because the "token and rules" filter and the "protein and gene" filter are not mutually exclusive: some rules in section 3.2 already remove many protein names.
APU employs two mutually exclusive beacon triggering rules, which are discussed in the following subsections.
Intriguingly, a cell autonomous circuit of pair-rule gene interaction has been described in Tribolium[ 30] but this might serve either to generate dynamic behavior, or to ensure that cell states are mutually exclusive once pair-rule periodic expression is established.
Theresa May has also indicated that economic access and tougher migration rules are not mutually exclusive.
Exception rules are never mutually exclusive and have always by definition contradictory conclusions (consequents).
The definition of strain families in the SpolDB4 data base is not clear: some rules are not mutually exclusive [19], and many of the patterns seen in this population have not previously been described.
Note that the probabilities within columns may sum to more than 1 since rules are not mutually exclusive.
The added rules help capture the precedence of the original rules which made them mutually exclusive.
This would rule out the "mutually exclusive" scenario because it predicts an under-representation of individual loci double positive for both transcripts.
Obviously these hypotheses are not mutually exclusive, and so this does not rule out the idea that the authors' mechanistic explanation could also play a role.
