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This reflected higher frequencies of transitions at CpGs in I-MT (range: 46.1 61.2%) versus II-MT (range: 41.2 43.3%) in the frequency box-plots of the 8 mutation types in Figure 5, panel B. Such most relevant features were used to geographically visualize MS and MT variation (Figure 6, panels A B).
We then examined the association between expression profiles and BRCA1 mutation types in our series.
We found that compound heterozygous mutations represented the majority of the mutation types in all of the patients.
Transition matrices for evolutionary models for amino acid substitutions are usually generated by counting mutation types in the alignments (see, e.g., [ 25] for an overview).
However, they assumed that the mutation types in this cohort of patients were more severe in the CLDN19 group, including a large deletion and frameshift mutations [ 12].
The color of the pins denote the different mutation types in the following way: black = indels, green = missense mutations, red = truncating mutations (nonsense, nonstop, frameshift alterations and splice site alterations), gray = other mutations.
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These findings may explain the strong preponderance of the IDH1R132H mutation type in glioma.
No clear correlations were found with mutation type in both PKD genes or with mutation position in PKD2 gene.
The error bars reported for each mutation type in each signature in P ¯ were calculated as the SD of the corresponding mutation type in each centroid over the I iterations.
The characteristic mtDNA mutation type in post-mitotic tissues (such as muscle and neurons) is the large-scale deletion [26].
Analysis of OS by EGFR mutation type in LUX-Lung 6 and LUX-Lung 3 revealed an OS benefit in afatinib-treated patients with Del19 mutations (Table 2) 34.
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