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High transition/transversion mutation ratios as well as bias in transition site context was observed in MAGGY and MGL elements, but not in Pot2 elements.
After the removal of the external branches the mutation ratios were still higher for the younger clades.
The empirical mutation ratios exceeded the average simulated values in the younger end of the time-scale but were lower in the older end.
The highest mutation ratios corresponding to fast acceleration in the apparent substitution rate of the coding sequence have occurred after the end of the Last Ice Age.
Mutation ratios of the 186 clades were sorted by coalescence ages of the clades and averaged over a "time-window" of 15 clades with similar coalescence ages in a sliding window analysis.
The non-synonymous to synonymous and RNA to synonymous mutation ratios were also presented as Ka/Ks or Kri/Ks values that gave the relative rates with respect to the rate of synonymous substitutions.
Similar(41)
Therefore, the mutation ratio was 25.7%% (Fig. 1) for TE genes.
Since symbolic preprocessing is very cost-intensive, they further compute the mutation ratio only once per test.
The results suggested that the mutation ratio is an effect rather than a cause for the acquisition of antibiotic resistance.
The main parameters of NSGA-II are population size, number of iteration, crossover ratio and mutation ratio are 200, 1000, 0.8 and 0.3 0.01, respectively.
We then performed sequencing of the entire mtDNA genome using the Illumina MiSeq platform and quantitated the 3243A>G mutation ratio in MiPSC5 and the sub-clones (Fig. 3C).
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