Sentence examples for mutation model we from inspiring English sources

Finally, in order to fully specify the mutation model, we have to fix the transition-to-transversion ratio k.

> -wrap-foot> To estimate the parameters in the background mutation model, we could fit the model in Table 1 to the sequences for which silent mutations were identified.

To fit a background mutation model, we used PAML [ 35] to fit the HKY model [ 34] to the promoters that contain the characterized binding sites for each factor.

For implementing the nucleotide mutation model, we define the state of each site i as a codon n = { n1 n2 n3}.

In contrast, the deleterious mutation model we present here does not need to invoke processes to augment competition between antigenic strains because a large proportion of fitness variation in the virus population arises from differences in deleterious mutation loads.

For each mutation model, we compared observed heterozygosities and expected heterozygosities simulated 10 000 times from the allele number at equilibrium using two-tailed Wilcoxon tests, where values significantly larger than expected indicate a bottleneck, and values significantly smaller than expected indicate demographic growth.

Furthermore, to exclude any adverse effect of blood circulation on the defects of gene expression in erythroid cells in both ribosomal mutation models, we injected rhodamine fluorescent dye into heart and analyzed the status of circulation at 3 dpf.

We have adapted the approximations in their Table 2, which correspond to the infinite sites mutation model as we assume here, to the metapopulation model that we are studying, which is slightly different from the one they have used.

Our simulation results are based on a certain pathway dynamics and mutation model; however, we believe that our findings generalize, which we can better understand on a genotype-phenotype space.

This is the mutation model that we simulated in our previous studies [ 29- 31].

Adhering to the constant mutation rate model, we fit the following model: d x = d0 + kx, where k is the daily rate of mutation, x is the sampling date measured relative to 1st November 2002, and d x is the number of mutations, as compared to the civet cat isolate, of the isolate sampled at date x.