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An infinite allele mutation model was assumed.

The Brownian motion approximation of the stepwise mutation model was applied to Y-chromosome microsatellites.

For tri-allelic single nucleotide polymorphisms, the parent-independent mutation model was used.

A stepwise mutation model was used for microsatellite evolution, while an infinite site model was used for mtDNA evolution.

For the partial 4811 bps sequence dataset, an F81 mutation model was used with a gamma distribution parameter of 0.0110 and a ti/tv ratio of 6.8.

Furthermore, no mutation model was applied to the simulations, and results relate strictly to standing variation at the start of selection.

The mutation model is an HKY85 model with mutational bias πA+T = 0.8 and a transition/transversion ratio of 4.0.

In addition, problem-specific migration and mutation model are introduced to improve the effectiveness of the new algorithm.

Estimates of genetic distance, based on the stepwise mutation model, were large (δμ2 = 15.35; DSW = 15.35) suggesting that the MLGs do not share a close genealogical relationship [35].

Analyses using the stepwise mutation model were also carried out, but they provided similar results, so only those with the infinite allele mutation model are presented.

However, because both mutation models gave qualitatively similar results, only the results with the single step mutation model are presented.