Sentence examples for mutation extraction tools from inspiring English sources

Current mutation extraction tools are only concerned with the first type, thus extracting mentions of protein or DNA changes.

Several corpora are available for the evaluation of protein mutation extraction tools.

The results in the tables show the complementarity of the mutation extraction tools.

The tables show results for different representations of the articles and different mutation extraction tools used.

The mutation extraction tools would need to take a closer look at these examples and incorporate the appropriate patterns.

Intrinsic evaluation of the mutation extraction tools is shown in Table 3 in terms of precision, recall and F1 score.

There are articles for which no mutation extraction tool could recover any mutation.

In this work, we instead perform an extrinsic evaluation of a mutation extraction tool to test the applicability of text mining, specifically for the curation of mutation databases.

The downloaded abstracts were then further filtered to include only those in which the EMU mutation extraction tool identified at least one mutation mention, resulting in a corpus of 810 abstracts.

Despite recovering most of the abstracts from MEDLINE, a limited proportion of those abstracts contain any mutation mentions when processed with the automatic mutation extraction tool [2373/9936 (23.88%) in COSMIC and 195/809 (24.10%) in InSiGHT].

In a previous study, we evaluated the ability of a mutation extraction tool to recover the curated mutations in the COSMIC and InSiGHT databases using the articles that were curated in these databases.