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The mp-B4149 and arf4-2 (SALK_070506) mutant were provided by Dolf Weijers (University of Wageningen, The Netherlands) and Alexis Maizel (COS Heidelberg, Germany), respectively.
The N2 Bristol strain was used as the wild-type strain, and all strains used in this work except the pk924 deletion mutant were provided by the Caenorhabditis Genetics Center (CGC, St . Paul MN).
Samples from 2.0 to 3.6 μg of amplified DNA derived from the omp10::himutantutant, were provided for library construction and sequencing by the Roche/454 (GS-FLX) method to the Interdisciplinary Center for Biotechnology Research (ICBR) at the University of Florida.
In the DREAM4 Inetwork_Size100 networeconstructionion challenge [ 21, 42], simulated steady-state measurements of the expression of each gene in the wild-type as well as in the single-gene knockout and single-gene knockdown mutant were provided for 5 different in silico networks (100 nodes each) from which the networks had to be reconstructed.
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For EGMS lines, the very progenitor mutant is provided.
The cad2-1 mutant was provided by Dr Christopher Cobbett (Melbourne University, Australia).
The JNK dominant-negative mutant was provided by Dr M. Karin (University of California, San Diego, CA).
The sequencing counts for each mutant are provided in Table S2.
The p38 dominant-negative MAPK mutant was provided by Dr. J. Han (Southwestern Medical Center, Dallas, TX).
A 1587Δ tap-1 mutant was provided with episomal tap-1AM−192262 or tap-1.
The p38 dominant-negative mutant was provided by Dr J. Han (South-western Medical CenTXr, Dallas, TX).
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