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For the spots identified by intrinsic signal imaging (n = 9: 4 and 5 spots from H1 and H3, respectively), the distribution of spots shifted to the right (higher in values of the correlation coefficient) when MUs were used to calculate values of correlation coefficient (Fig. 16 A).
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Three clones corresponding to house mouse (Mus musculus) were used as negative controls [GenBank: NM009060, NM008690, NM019476] while actin and rRNA sequences from sunflower (H. annuus) [GenBank: AAF82805] were used as a positive control for expression analysis in all microarray slides.
In our study, 4004 Mus musculus homologs were used to create the GenMAPP.
For allele-specific RT PCR, embryos resulting from X-GFP Mus Musculus musculus crossed with Mus musculus castaneus mice were used to derive MEFs.
(http://epigenomics.snu.ac.kr/mouse_network/total_mouse.topology) An annotation file and reference genome from ENSEMBL (Mus musculus.GRCm38.70) [ 22] were used.
Bos Taurus, Mus musculus, and Homo sapiens were used to represent the Ver-endo phase.
Proteins SYG1 in Saccharomyces cerevisiae, SYG-1 in Caenorhabditis elegans, and XPR1 in Mus musculus and Homo sapiens were used as out-groups in phylogenetic analyses.
Swiss adult male mice (Mus musculus) weighing between 25-35 g were used for the experiments.
The obtained full-length database entries were used for a Mus musculus-restricted blastp-search of the nr database and for each species only those sequences matching Jmjd6 as the best BLAST hit criterion were retained for the analysis.
Data from nine microarray experiments that evaluated the effect of multiple toxic agents on mouse (Mus musculus) embryo gene expression levels were used to reconstruct the adherens junction pathway.
The annotations present in the Mus musculus gtf file from the ENSEMBL release 67 were used as reference for counting.
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