This procedure is not guaranteed to identify k hap unique haplotypes as multiple haplotypes near the k hap cutoff may have the same Hamming distance.
A multiple sequence alignment was constructed comprising 182 unique haplotypes from 208 Cx. annulirostris, 37 Cx.
Identical allele sharing was more prevalent at the DRA locus, with 7 of the 22 unique alleles found in multiple species, whereas a lower proportion of the unique haplotypes (5 out of 48) were shared by two or more species at the DQA locus.
Cloning of rpb2 yielded many more unique haplotypes than species but did not appear to comprise multiple loci predating the origin of Xanthorrhoea because the genus was monophyletic.
Locations for samples representing each of the unique haplotypes found in Germany are detailed in Ludwig et al. (2012).
Combined data set (3 codons of COI + 16 S rRNA + 28 S rRNA) of unique haplotypes was used for phylogenetic analyses.
The cts sequences (427 base pairs, 80 SNPs) of the 209 strains of P. syringae selected randomly from snow and rain represented 54 unique haplotypes.
Haplotype network analysis revealed that species from different continents formed unique haplotypes with no gene flow.
O. meridonalis (from Australia) and O. glumaepatula (South America) each formed independent unique haplotypes, H16 and H17, respectively (Fig. 5).
The combined dataset defined 28 unique haplotypes.
