Sentence examples for multiple synteny blocks from inspiring English sources

– Select contigs containing multiple synteny blocks (i.e., rearranged contigs).

All CaLGs (except CaLG7) showed multiple synteny blocks with the Gm chromosomes (Supplementary Fig. S1).

Multiple synteny blocks were observed between different lines possibly indicating sites of recombination.

To resolve this dilemma, we use multiple synteny block scales in order to build multiple scaffolds and then reconcile these scaffolds.

OrthoCluster can identify "perfect segmental duplications"–duplications containing no mismatches, "imperfect segmental duplications"–duplications containing a certain level of mismatches (genetic interruptions), as well as synteny blocks among multiple genomes [ 18].

Also, we filter synteny blocks that have multiple copies within any sequences, since duplicated synteny blocks make further analysis in the breakpoint graph complicated.

To find synteny blocks, we need a multiple genome alignment in advance.

To tackle these problems, we have recently developed a new method called OrthoCluster, a computer program for the systematic detection of synteny blocks between two or among multiple genomes [ 6].

While each reference sequence is transformed into a single sequence of synteny blocks (a list of signed numbers), the assembly corresponds to multiple sequences of synteny blocks because the target genome has been fragmented into multiple contigs.

Synteny blocks, representing conserved sequence blocks between all mitogenomes, were computed using Mauve [ 43], a tool performing multiple genome alignments between sequences that can be rearranged.

These large synteny blocks are unlikely to be found by chance under a random breakage model, even after correcting for multiple testing (data not shown) [ 28].