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ClonalFrame analysis also identified high number of recombining sites in the analyses that included multiple strains from a single species.
The sequencing of multiple strains from single bacterial species has revealed extensive genomic diversity within species [ 1- 10].
The first cluster consisted of strain RL, P. psychrotolerans L19, P. luteola XLDN4-9 and multiple strains from P. stutzeri and P. mendocina.
This sequencing effort was focused on exploration of genomic variation in the context of evolution, thereby using multiple strains from different Saccharomyces species.
Importantly, the HCA-2 mAb showed broad in vitro inhibition against multiple strains from all influenza A NA subtypes (N1-N9) and influenza B viruses from both Victoria and Yamagata genetic lineages [ 3, 4].
Systematic screening for multiple strains from individual MLN samples is a time-consuming strategy not routinely applied in laboratory protocols but essential to understanding both the pathogenesis and epidemiology of Salmonella infections in pigs.
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Our methodology could be applied to the analysis of sequences of single copy genes from multiple strains or from sister species of each fungus to confirm that RIP-like patterns of hypermutation occur only in repetitive DNA.
Studies of population-wide nucleotide sequence variation, sequence comparisons of multiple strains isolated from a single biopsy, as well as comparisons of genetic relationships of sequential H. pylori isolates provided evidence that frequent recombination plays a central role in creating allelic diversity in H. pylori [7], [9], [20].
Heightened awareness of possible infection with multiple strains, either from reinfection or coinfection, is critical when monitoring patients who are not improving or who recrudesce despite therapy guided by drug-resistance testing.
Multiple strains of EcO157, isolated from samples obtained from farms and ranches associated with outbreaks and from the Salinas Valley watershed, were typed by MLVA and PFGE.
To assess whether D KL was influenced by taxonomy we picked out one strain from each species to decrease bias from multiple strains, reducing the dataset to 709 chromosomes.
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