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When multiple sequences from other species were in the same orthologous group, they were all mapped to the same UniProtID based on C. elegans.
Multiple sequences from single-genome-amplification of HIV-1 RNA and DNA from the genital tract and blood of each woman were compared in a cross-sectional study.
If there were multiple sequences from a single nematode species in an orthologous group, the indel had to be present in at least one sequence within a species.
Because of the frequent deletion of the sequences from the original constructs at the junctions, we often observed multiple sequences from one PCR band (Fig. 2).
Additionally, multiple sequences from individual viral isolates clustered together indicating genetic-relatedness.
Clusters with multiple sequences from some taxa were treated as follows.
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RAxML was used for generating a phylogenetic tree based on concatenated multiple sequence from the six smut genomes alignments of 1 1 orthologous sequences, which were done using MAFFT.
The use of barcode tags enables high-fidelity sequencing by grouping and constructing a consensus of multiple sequences generated from a single molecule.
Though the neutrality profiles by position are not identical for all sequences, the neutrality predicted by SEN has consistent performance across multiple sequences drawn from the same alignment.
A viral isolate contains one or more nucleotide sequences, allowing multiple sequences extracted from one viral genome to be grouped together.
Multiple sequences were obtained from these clones to avoid misinterpretation of PCR errors.
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