Sentence examples for multiple sequence types from inspiring English sources

Single-stranded conformation polymorphism (SSCP) was used to screen the nested PCR products for presence of multiple sequence types.

We found that EAEC strains from Nigeria belonged to multiple sequence types (STs), but that some ST complexes were predominant.

Multiple sequence types have been identified from the Central European region in ticks and human samples: ST2 from Ukraine, ST16, ST18 from Romania and Slovakia, ST23 from Czech Republic and Slovakia and ST22, ST29 from Slovakia.

We were able to significantly improve the O. trifallax macronuclear genome assembly by a custom meta-assembly pipeline (which we now call "Terminator 1.0"), but this pipeline was complex and used multiple sequence types.

The shared or core genome was comprised of genes with multiple sequence types belonging to five pfam families, and genes belonging to 12 pfam families, including the holin genes, which were nearly identical.

However, one can imagine that a Quiver-like polishing algorithm that uses multiple sequence types and their quality values that is able to take into account each sequence type's inherent biases may yield the most error-free assembly, particularly if the algorithm better focuses on resolving paralogs, possibly through contextual based error correction as in chromosome phasing algorithms.

Subsequent studies (6 – 8 ) have used the SNP signatures described by Vogler et al. (5 ) and new SNPs discovered from new whole-genome sequences or multiple sequence typing data to further refine phylogeographic patterns within F. tularensis, particularly F. tularensis subsp. holarctica.

Multiple ITS sequence types may originate by different evolutionary mechanisms and their utilization in molecular phylogeny may shed light on polyploid ancestry, genome relationships, genomic constitution and evolution of hybrid species [30] [32], [52], [56].

Although previous studies have found evidence of multiple ITS sequence types within individuals of several fungal species, including lichenized fungi [ 99- 101], intragenomic ribosomal variation has not been reported in Parmeliaceae.

Given the alternate hypotheses of (1) Common origin followed by sequence divergence, or (2) Independent origin of multiple arsC sequence types with broadly similar reaction centers and general mechanisms, based on the phylogenies observed and the general rarity of convergent evolution at a sequence level [ 33, 34] we suggest that the former is more likely.

Three methods have shown some potential in this direction, the so-called spoligotyping assay (Mycobacterium tuberculosis, 40,000 entries database), Multiple Loci Sequence Typing (MLST; up to a few thousands entries for the more than 20 bacterial species), and more recently Multiple Loci VNTR Analysis (MLVA; up to a few hundred entries, assays available for more than 20 pathogens).