Because we are stopping the dynamic programming early to generate seeds, the global best alignment may contain multiple seeds and in practice this will tend to be the case for long alignments.
Importantly, a given peak could be identified multiple times and by multiple seed ROIs, and the full peak coordinate list was retained for each zone.
We identified 278,979 unique SNPs by mapping the 454 and Sanger sequences to the reference, and by mapping four datasets of Illumina cDNA sequences from multiple seed sources, genotypes, and tissues.
Expression data further revealed that the legume bZIP genes were expressed constitutively or in an organ-specific, development-dependent manner playing roles in multiple seed developmental stages and tissues.
Applying multiple seeding components and an eastward neutral wind, east west asymmetry, and tilted structures can also be reproduced, as shown in Fig. 8 (Yokoyama et al. 2015).
Model fitting was performed with multiple seed values for dN/dS and assuming either the f61 or f3x4 model of codon frequencies [ 52].
Three experiments were conducted to determine whether microCT scans can be used to confirm at what time (weeks after pollination) fertilisation occurred, whether seed viability can be assessed by scanning multiple seeds together and whether viable seed can be counted in a closed P. radiata cone.
To reduce unnecessary seed extension, both BLAT and SSAHA2 use non-overlapping seeds by default and require multiple seed matches, which should work well for random sequences, but still involves many seed extensions in highly repetitive regions.
By principled constraints, we meant that instead of multiple seed based analysis the FDG-PET and ASL fMRI results helped constrain our analysis to the DMN and FPN.
