Sentence examples for multiple secondary structures from inspiring English sources

The highly conserved 5' end of the U2 snRNA can adopt multiple secondary structures at several steps during the splicing cycle [19] [26].

When multiple secondary structures were possible, the most stable (lowest free energy (-ΔG)) one was preferred.

Latent phenotypes may also exist in RNA, which can form multiple secondary structures through thermal motion [ 6, 7], as well as in metabolic networks of chemical reactions, which can be viable on carbon sources without prior selection for such viability [ 8, 9].

Multiple secondary structure templates are also used, if possible, to aid in the modelling of the specific target sequence.

So far there is no conclusive proof that myosin VI can exist as a folded molecule but its tail contains extensive regions which are predicted to be unstructured by multiple secondary structure prediction algorithms (performed using the [email protected] Protein Sequence Analysis web server) ([81] and there are helical regions with hinges that might also allow the tail to fold.

To account for this, a model is developed wherein Na+, which destabilizes secondary and tertiary structures in the presence of Mg2+, facilitates native folding by destabilizing the multiple alternative secondary structures with a higher-order dependence.

The microRNA primary transcripts (pri-miRNAs) contain one or multiple hairpin secondary structures.

However, single stranded intermediate forms will be present and multiple alternative secondary structures are predicted to be stable.

Results: In cross-validated benchmark tests, RAF achieves accuracies equaling or surpassing the current best approaches for RNA multiple sequence secondary structure prediction.

To model the N- and the C-terminal regions of PPLP2, AnDOM algorithm, two threading algorithms, multiple alignment secondary structure predictions and critically-reject-bad-structure predictions were used in the QUARK program (Xu and Zhang, 2012).

The base pairing probability is used since it integrates likelihood of single-strandedness over multiple possible RNA secondary structures.