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Therefore, the dataset comprised multiple representative isolates of both types of high-risk K. pneumoniae.
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Multiple isolates were collected from each pig carcass sample, but only representative isolates with distinct pulsed-field gel electrophoresis (PFGE) patterns were included in the characterization of plasmids.
Of these STs 38 had multiple representatives (2 to 47 isolates) while 81 were found in only a single isolate (singletons).
Of all identified STs 79 had multiple representatives (2 to 50 isolates) while 47 were found in only a single isolate (singletons).
We then selected five representative isolates for comprehensive genomic analysis.
Representative isolates from each treatment were sequenced for further confirmation.
A total of 102 representative isolates were characterized (Table 2).
These genotypes were compared with 25 representative isolates from the global population (Table S2).
Representative isolates underwent ESBL gene characterisation and molecular typing.
Sequences of representative isolates were deposited in GenBank.
Representative isolates were included for each patient bacteraemia episode.
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