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Exact(9)
The 5386 nucleotide bacteriophage øX174 genome has a complicated architecture that encodes 11 gene products via overlapping protein coding sequences spanning multiple reading frames.
Therefore, in the case of multiple reading frames, each tag transmits its ID once every frame regardless of whether the previous transmissions were successful.
Hits to multiple reading frames from the same fragment were counted as a single hit.
In fact multiple reading frames were evident in many full-length L. salmonis transcripts.
The BLASTX search considered translation of the assembled consensus (unigenes) in multiple reading frames.
However, multiple reading frames are easily supported by encoding the first symbol or the first two symbols as uncompressed data and then commencing the 2D process.
Similar(51)
For each GO term and PANTHER family, the number of matching tomato and potato BESs was counted; if a single GO term or PANTHER family was assigned to the same sequence multiple times, for example due to multiple open reading frames in the same sequence, it was only counted once.
In prokaryotes, translation of multiple open reading frames in a polycistronic RNA occurs through multiple independent translation initiations.
This could create some ambiguity since HIV has multiple overlapping reading frames.
In three other cases, a single TCS gene is predicted to be split into multiple open reading frames (ORFs).
We plan to incorporate explicit prediction of multiple overlapping reading frames in the near future, to further improve sensitivity on the test set.
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