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Hence multiple query genes are required.
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In the case of multiple query sequences, MetaQuery will build a Spearman correlation matrix of query genes across microbiome samples.
This is most likely due to the fact that many of the query genes belong to gene families possessing many multiple closely related gene copies.
To systematically compare the precision achieved in multiple- versus single-species searches, we evaluated the MSGR's performance on every pathway that had at least five query genes available for searches in single- and a multiple-species.
The query genes sorted significantly toward the top of the multiple-species search orderings.
To begin with, the QlicRice database has placed emphasis on the integration of different QTLs and gene loci related to abiotic stresses by implementing multiple query options.
For comparative studies focusing on a single gene, however, the user may wish to provide sequence alignments containing multiple query sequences to be tested against multiple self-defined references.
To determine if the higher precision of the multiple-species searches than the single-species searches simply reflected the use of conserved query genes, we repeated the cross-validation analysis for the Human node using only query genes that had predicted orthologs in both worms and flies.
p value is the probability that the occurrence of the number of query genes in the gene list is random, with this Holm-Bonferroni corrected for multiple testing.
DRUGSURV provides multiple query options.
Multiple query searches are also available.
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