Sentence examples for multiple protein databases from inspiring English sources

Multiple protein databases provide their data following the DAS principles, for instance UniProt and InterPro.

Here, we compared all the dataset against multiple protein databases as described earlier (Dixit et al., 2009).

To identify and remedy potential gaps in our assembly we conducted proteomic searches against multiple protein databases, and these searches provided 168 additional protein identifications over the searches against the Oases assembly alone.

Of the 7,039 predicted genes, 6,800 (96.6%) were transcribed in either autotrophic or heterotrophic growing cells and 5,831 (82.9%) genes could be functionally annotated by homology search against multiple protein databases (Additional file 1 Table S6), including TrEMBL, Swissprot, KEGG, InterPro, and Gene Ontology (GO).

A few protein resources like InterPro (Mitchell et al., 2015) and the Conserved Domain Database (CDD) (Marchler-Bauer et al., 2015) also combine multiple protein domain family databases like Pfam, SMART, TIGRFAM among others, providing higher sequence coverage compared with individual resources.

To examine the cross-species conservation for the CYFIP1 and NIPA2 proteins, the cDNA sequences and their predicted amino acid sequences were compared to multiple nucleotide and protein databases using the BLASTN and BLASTP programs [ 71].

The capability to match one peptide sequence to multiple protein references within the database was not enabled.

When a peptide sequence >8 residues long is contained in multiple protein entries in the sequence database, the proteins are grouped together and the highest scoring one and its accession number are reported.

In parallel, the sequences of all subclasses were retrieved from the NCBI database and multiple protein alignments were constructed for each subclass using the CLUSTAL W algorithm in the software package MacVector 7.2.2.

Secondly, these databases typically operate on redundant protein databases, possibly containing multiple copies of the same protein like splice variants or protein fragments.

We have searched multiple publicly available fungal genome and protein databases (including NCBI [ 40] and UniProt [ 41]) using the appropriate BLAST algorithm with default settings and with the mouse CBF1 protein [GenBank: NP_033061] as a query.