Sentence examples for multiple protein alignments from inspiring English sources

From multiple protein alignments including sequences identified in the four aerobic bacteria (A.

Multiple protein alignments showed that MnGus protein had homology to the known and predicted Spsb homologues in other animals.

ClustalW [93] multiple protein alignments were used to construct phylogenetic trees as determined by the Neighbor Joining method with bootstrap re-sampling (detailed in the legends for Figures 1), using MEGA3.1 [94].

Here, we derive each 10,000 divergence specific substitution matrices for orthologues and paralogues from the Pfam collection of multiple protein alignments and quantify the action of three physico-chemical forces and of the structure of the genetic code at high resolution using correlation analysis.

Several programs use multiple protein alignments to improve the back-translation [ 12, 13].

ClustalX version 2.0.5 [ 46] was used for multiple protein alignments with manual adjustment.

Sequences were aligned using the multiple protein alignment algorithm, Clustal W [41], and analyzed using Philip version 3.5 (DNA parsimony program).

BAliBASE is a benchmark database to evaluate the performance of software programs for multiple protein alignment [ 37].

The multiple protein alignment of human albumin, alpha-fetoprotein, and afamin was performed using ClustalW (Larkin et al. 2007).

Furthermore, CDD database searches and multiple protein alignment revealed that the S-1 protein contained the consensus motifs of partitivirus RdRps (RNA_dep_RNAP, cd01699).

Additional file 13: A CLUSTALW multiple protein alignment of the AA and AB QTL genotype porcine amino acid sequence compared to bovine, human and mouse GBP5 protein.