Sentence examples for multiple phylogenetic trees from inspiring English sources

Suppose multiple phylogenetic trees (called gene trees in this article) are reconstructed, each from some gene for these species.

If multiple phylogenetic trees suggest that the genes in question are most closely related to different organisms, the "independent LGT" scenario is most likely correct.

In my formulation of the tests for UCA, independent ancestry models are represented by multiple phylogenetic trees, one tree for each group of taxa that is assumed to be genealogically related under this particular model [ 1].

We propose a pair of programs for dealing with multiple phylogenetic tree comparison, against a given reference tree.

Multiple alignments, phylogenetic trees and detailed results are available at [ 30].

Based on the multiple alignments, phylogenetic trees were constructed using three different methods: neighbor joining (NJ), maximum parsimony (MP) and maximum likelihood (ML).

The application provides core modules to enable the visualization, manipulation and transfer of DNA sequences (linear, circular and short oligos such as primers and probes), amino acid sequences, pair-wise and multiple alignments, phylogenetic trees, 3D structures, sequence chromatograms, contig assemblies, microsatellite electropherograms and statistical graphs.

Multiple alignments, phylogenetic tree constructions and laterally transferred gene mining were carried out using a gene mining pipeline that we developed in a previous study [ 28].

Researchers have used a two-tiered pretest to assess student tree thinking by presenting multiple styles of phylogenetic trees for students to interpret and compare (see Halverson et al. [2011]).

One novel approach is simultaneous alignment and tree estimation, such as that performed by SATé, a recently released program [21] [22] that unites the inference of optimal multiple alignments and phylogenetic trees into a single process, thereby eliminating manual examination of MSAs for molecular ecological inference.

Multiple alignments and phylogenetic trees were generated with MacVector software (Version 10.0.2, MacVector Inc).