Sentence examples for multiple phylogenetic profiles from inspiring English sources

Multiple phylogenetic profiles are combined into a single vector v∈[0, 1] 1 ×  n where the j-th element is equal to 1 only if the j-th elements of all the COG profiles are equal to 1 (i.e. the combined profile vector is the AND function of the individual COG phylogenetic profiles).

Phylogenetic profiles particularly suit our objective of identifying conserved virulence factors across multiple human pathogenic species.

Such methods include the detection of gene clusters that are conserved across multiple genomes [ 4, 6], the detection of gene sets which exhibit similar presence or absence patterns called phylogenetic profiles [ 2] and finally the detection of gene fusion events [ 1, 5], all indicative of protein interaction or general functional association of the corresponding gene products.

To test the relationship between MSI and phylogenetic relatedness, multiple phylogenetic similarity matrices were constructed for all of the taxa examined, using recently published phylogenetic hypotheses [33] [43].

On analyzing the phylogenetic profiles of T6SS proteins (Table S2), three significant protein clusters (proteins with similar profiles) were obtained.

Previous researchers analyzed proteins' localization in a cell according to their phylogenetic profiles.

This study utilized an alternate approach that identifies genes with similar phylogenetic profiles (PPs).

It describes a computational pipeline using phylogenetic profiles to identify new virulence genes in S. agalactiae.

Phylogenetic profiles were constructed to compare the complete set of Hfx.

Phylogenetic profiles were constructed from these comparisons and analyzed as in [69] with the following modifications.

The LS classification is based on a level of protein conservation with respect to phylogenetic profiles.