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For greater numbers of taxa, a split decomposition network [ 22] can be used to simultaneously depict multiple phylogenetic hypotheses, with each split's length corresponding approximately to its support from the data.
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However, both phylogenetic hypotheses supported multiple, independent losses of sex within the Nosema genus.
Additional studies including information on interactions across environments and genotypes, and across multiple phylogenetic scales will be needed to test the hypothesis that regulatory robustness is an evolved property of these networks.
To test the relationship between MSI and phylogenetic relatedness, multiple phylogenetic similarity matrices were constructed for all of the taxa examined, using recently published phylogenetic hypotheses [33] [43].
The reconstructions suggest that the last common ancestor of metazoans already possessed multiple CA genes, but the number of genes differs between the phylogenetic hypotheses (Additional file 7).
However, distinguishing between alternative phylogenetic hypotheses requires the addition of more data from multiple loci and a detailed evaluation of the utility of various data partitions to resolve relationships within this group.
Phylogenetic hypotheses are powerful tools in this context.
Recent discoveries of new fossil hominid species have been accompanied by several phylogenetic hypotheses.
The second is quantitative and represents formal phylogenetic hypotheses about the relationships among organisms.
Our results marginally support theridiid monophyly, although the phylogenetic structure of the outgroup is unstable and largely contradicts current phylogenetic hypotheses based on morphological data.
We constructed phylogenetic hypotheses for Mesoamerican Rhamdia, the only genus of primary freshwater fish represented by sympatric species across Central America.
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