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multiple nucleotide changes were not taken into account.
Another is multiple nucleotide changes in a codon.
Evidence for multiple nucleotide changes was found by Averof et al. [27], and the frequency of multiple nucleotide changes was evaluated [20].
Alternative explanation is that the significant fraction of these substitutions occurred with multiple nucleotide changes.
We have examined how the AIC is improved by enabling multiple nucleotide changes in a codon.
When multiple nucleotide changes are taken into account in the model ML-91, these discrepancies disappear and the AIC values significantly decrease, indicating the significance of multiple nucleotide changes in codon substitutions; see Fig. 1, Fig. S1, and Table 3.
Similar(24)
To gain further insight into the impact of variable site removal and long-branch exclusion on saturation in our data matrix (i.e., the history of multiple nucleotide state changes at individual sites), pairwise genetic distances between all accessions were determined in MEGA4 [ 83] both without correction and with application of a Jukes-Cantor correction.
The matrix (m μν ) is parameterized with 9 parameters; one additional parameter (m) is needed to represent the ratio of multiple to single nucleotide changes.
The function of this region was further explored by well-established approaches such as (i) multiple mutagenesis (three nucleotide changes, F9mut1) or (ii) deletion (six nucleotides, F9ΔES1) (Fig. 2A).
In the present model, a nucleotide mutation rate matrix is fully parameterized by 8 parameters, and one additional parameter (m) is employed to represent the ratio of multiple to single nucleotide changes in a codon.
The DUF1220-encoding NBPF genes required the most corrections, with 3 genes removed, 2 genes reassigned to the 1p11.2 region, 8 genes requiring assembly corrections for DUF1220 domains (~91 DUF1220 domains were misassigned), and multiple instances of nucleotide changes that reassigned the domain to a different DUF1220 subtype.
More suggestions(15)
multiple behavioral changes
multiple nucleotide indels
multiple nucleotide variations
multiple internal changes
multiple nucleotide polymorphisms
multiple nucleotide variants
multiple social changes
multiple nucleotide sequences
multiple nucleotide databases
multiple nucleotide insertions
multiple structural changes
multiple nucleotide alignments
multiple nucleotide positions
multiple nucleotide mutations
multiple pathophysiological changes
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