Sentence examples for multiple motifs for from inspiring English sources

In contrast, FCmotif can find multiple motifs for each TF using the same data sets.

As proof of principle, we find multiple motifs for the insulin dataset.

Motif databases very often contain multiple motifs for the same TF, or very similar motifs for different TFs.

In contrast, using the same data set, CisFinder was able to find multiple motifs for each TF, e.g. POU5F1 (also known as OCT4 or OCT3/4), ESRRB, and CTCF (Fig.  2C E).

This yielded multiple motifs for some TFs and none for others, and some motifs were associated with TF families rather than individual TFs; thus, our analysis was based on "motif sets" that share a common annotation, rather than individual motifs.

To gain an overview of the full motif collection and to compare among the multiple motifs for each protein, we used the PWMclus tool (Jiang and Singh, 2014), with default settings, to obtain groups of highly related motifs from all TFs within each DBD class.

When the same atom is identified for multiple motifs, supervised machine learning techniques such as K-nearest neighbors are used to remove duplicates and assign the atom to the correct motif.

The prior P Q = c|Θ,φ) depends now on Θ and thus can be adjusted for multiple motifs.

Different from previous motif generation methods that attempt to obtain a maximal description for all pooled sequences as a whole [ 20, 21], our workflow searches for multiple motifs, balancing the number of sequences each motif represents and the divergent nature of the recognition motifs of a given binding protein.

For our biophysical approach, using a k-mer based method allowed us to capture both the dependency among positions within the binding site as well as multiple different motifs for a single TF.

The justification for combining multiple motif discovery programs is described in Additional file 1.