Because there are multiple microarray elements matched for some genes, the heatmap and line plot are displayed according to microarray element IDs.
The identification of the CHO S100a6 promoter sequence was based on the analysis of microarray transcriptomics data described by [ 14].
However, specific requirements of projects restricted to dedicated 'omics' might be adequately met by systems tailored to that 'omics' data, e.g. BASE for microarray transcriptomics or XperimentR for a combination of transcriptomics, metabolomics and proteomics.
The chromosome coordinates for genes, exons and UTR; CDS, cDNA and protein sequences; Pfam, Panther and KOG domains; and microarray, transcriptomics, proteomics, EST, 5'RATE and full-length cDNA are some of the data currently available for bulk download.
To calculate the DEGs, we used a threshold of 2 for the absolute values of the fold change in gene expression in log2 scale for the Illumina microarrays transcriptomics data and a threshold of 4 for the higher dynamic range Illumina HiSeq 2000 NGS transcriptomics data.
Data from multiple platforms including transcriptomics (microarray analysis), proteomics (UPLC/QTOF-MS), and metabolomics (GC-TOF/MS, UPLC/MS, and UHPLC-LTQ/MS) were integrated using the most recent development of orthogonal projections to latent structures called OnPLS.
By applying a network approach to multiple blood transcriptomics datasets, we have identified five coexpression PPI modules that associate with chronological age in humans.
This platform had been used in multiple clinical microarray studies [18 21].
Multiple perturbation microarray experiments were done for Pho4p.
Integrative and comparative analyses of multiple transcriptomics, proteomics and metabolomics datasets require an intensive knowledge of tools and background concepts.
