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The number of divergent sites were corrected for multiple hits using a Jukes-Cantor correction.
Average pairwise diversity and divergence (D xy ) estimates were corrected for multiple hits using a Jukes-Cantor correction [ 67].
π and D xy estimates were corrected for multiple hits using a Jukes Cantor correction (Jukes and Cantor 1969).
In all cases, estimates of the numbers and rates of nucleotide substitution were corrected for multiple hits using the Jukes-Cantor model [ 26].
The relative rate of nonsynonymous (dN) and synonymous substitutions (dS) was calculated according to Nei and Gojobori [ 55], applying the correction of Jukes and Cantor [ 56] for multiple hits using MEGA 5 [ 54].
Alternatively, a user may choose to select a number of search hits and then perform advanced graph queries on multiple hits, using the operations provided by the Pathway Commons cPath2 web service.
Similar(54)
A high-throughput maximum-likelihood phylogenetic analysis [ 23] was applied for CDSs with multiple-hits using the sorghum predicted proteome [ 14].
Number of genes (including single and multiple hits) expressed using CDS, 500 bp upstream and downstream sequences.
Performance analysis of our second-generation fragment library (FL2) in screening campaigns illustrates the complementary nature of flat and 3D fragments in exploring protein-binding pockets and highlights our ability to deliver fragment hits using multiple screening techniques for various target classes.
For the similarity search results, pair-wise alignments of the queries with the corresponding hits are shown, but the user also has the possibility to request for a multiple alignment of all the hits using Clustal Omega (54) along with a representation of the residue frequencies at each position produced by WebLogo (55).
K-Estimator 6.0, a divergence estimator program employing the Kimura two-parameter correction method for multiple hits, was used to estimate the frequency of synonymous and nonsynonymous nucleotide substitutions [ 41].
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