Sentence examples for multiple genomes which from inspiring English sources

Furthermore, conserved pathogenic regions in multiple genomes which have been identified will help in understanding the common pathogenic behavior of this pathogen.

For this purpose, we developed a graph-based algorithm for aligning conserved regions of multiple genomes, which finds the order of pre-identified gene families that retains to the greatest possible extent the conserved gene orders.

However, during the last few years, methods using multiple genomes, which specifically take into account their evolutionary relationships, have been developed and are only beginning to show improvements over dual-genome prediction methods [ 11].

The traditional approaches used to establish orthology relationships of gene families are mainly based on constructing multiple alignments of sequences identified by reciprocal best BLAST hits between multiple genomes, which are then used to infer phylogenetic relationships via maximum likelihood or parsimony methods [ 31, 32].

MAPPER (multi-genome analysis of positions and patterns of elements of regulation) is a platform for the computational identification of transcription factor binding sites (TFBSs) in multiple genomes which uses an innovative technique that combines TRANSFAC and JASPAR data with the search power of profile hidden Markov models.

This and other information for all GIs is presented in Additional file 3. We identified GIs in B. pseudomallei based upon the aligned differences observed across multiple genomes, which could be explained by horizontal acquisition of DNA segments from other organisms.

Max, Mad, and Mnt, all members of the Myc bHLH superfamily, are all either insufficient or dispensable in explaining the correlation of E CG) with RiBi as revealed by a comparison of multiple eukaryotic genomes, which differ in their bHLH repertoires.

Using sites that appear conserved between human, mouse and fruit fly, we have attempted large-scale automatic annotation on multiple genomes in coelomata, which is the common taxonomy node covering the three species.

Lastly, our previous study of bacterial genomes with multiple chromosomes included several Burkholderia genomes, which exhibited increased evolutionary rates consistent with reduced expression on secondary chromosomes (Cooper et al. 2010).

Most plausibly, the prokaryotic ancestor(s) of eukaryotic chloroplasts were fully equipped with their own multifaceted signal transduction circuitry [ 14, 48], as observed in cyanobacterial and proteobacterial genomes which encode multiple sensor kinase/response regulator pairs [ 11, 12, 49].

Chromosome data continue to be of interest, especially in studies of hybrids in which multiple genomes are combined or genomes are duplicated.