Sentence examples for multiple genome aligner from inspiring English sources

The multiple sequence alignments were generated using Multiple Genome Aligner [ 13].

The Mauve progressive multiple genome aligner was used to provide comparative alignment of genome features from L. erinacea, A. radiata and O. kenojei (16, 17).

To detect triplets of conserved sequence segments among the three species, multiple genome alignments were performed using the progressiveMauve aligner [ 44], with the following parameters: seed weight of 20 and use a family of spaced seeds.

Finally, we did not test any of the numerous pairwise aligners or pairwise synteny mapping methods, as our work focuses on the multiple genome alignment problem.

Multiple genome alignment remains a challenging problem.

We downloaded and tested all multiple-genome aligners that were publicly available as of May 2008, when this work was completed.

Sequences were aligned in Mauve genome aligner [ 94].

Genomic alignments were then performed using the MAUVE genome aligner [ 40] and the parameters described in [ 41].

Mauve is a general-purpose genome aligner that identifies LCBs despite small rearrangements and reversals.

Multiple whole genome alignments of 21 available Anopheles assemblies were built using the MULTIZ feature of the Threaded-Blockset Aligner suite of tools [ 69], employing a similar approach to that used for other multi-species whole genome alignments such as those for 12 Drosophila [ 70] and 29 mammal [ 71] genomes.

This general-purpose multiple sequence aligner is able to handle whole-genome alignments and has the advantage that it identifies syntenic blocks despite rearrangements and reversals.