Sentence examples for multiple gene sets from inspiring English sources

Some genes were assigned to one or multiple gene sets downloaded with the GSEA package.

In this study, multiple gene sets were evaluated with the GSEA.

By setting the statistical significance level at FDR q<0.05, we identified multiple gene sets over-represented among the detected molecular paths (Table S2).

For example, plasmid pCAR3 contains multiple gene sets, which are involved in the carbazole degradation pathway in a carbazole-degrader Novosphingobium sp. KA1 (previous Sphingomonas sp. KA1) [10].

Our study showed that by aggregating the predictive strength from multiple gene sets we can improve the outcome prediction in breast cancer, and it can be broadly applicable to breast cancer survival risk assessment.

IB-GSA method is to test the null hypothesis that there is no gene interaction enrichment in S. When multiple gene sets in a database are evaluated, the estimated significance levels are adjusted for multiple hypothesis testing.

Gene sets showing significant enrichment after adjustment for multiple gene set testing (family-wise error rate (FWER) P < 0.05) are presented in bold.

Gene Set Enrichment Analysis (GSEA) comparative analysis using multiple gene set collections clearly showed that temporal changes in gene expression were functionally related to cardiomyocyte differentiation.

The proposed framework demonstrates a straightforward yet effective approach to improve the survival prediction power by integrating multiple gene set predictors.

Neither MAPK-upregulated nor MAPK-downregulated genes showed any significant relationship with age cohort, PR status or ERBB2 status when multiple gene set testing was taken into account.

However, after multiple gene set testing, only enrichment of the proliferation signature retained significance in the ERBB2 over-expressing tumors (FWER, P = 0.01).