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In the case of proteins with multiple functional assignments, the maximum indices of overlap are considered.
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Including genes with multiple functional assignment, a higher proportion of genes were assigned to lipid metabolism (507 genes) and cell wall metabolism (475 genes) (Fig. 2b).
hRMN allows the assignment of multiple functional categories while avoiding common problems in annotation transfer from heterogeneous datasets, such as an independency of the investigated datasets.
However, proposed late regulatory genes were reclassified and new functional assignments for ORF55 were strongly suggested.
These functional assignments are also reasons for the design and topology of fieldbus communication systems.
It makes functional assignments from a pool of 2,972 unique functional categories.
Annotations and functional assignments also can be accessed at the CCG website (http://ccg.murdoch.edu.au/).edu.au/
Domain information was annotated by InterProScan and functional assignments were mapped onto Gene Ontology (GO).
Number of MEL-COGs with no/multiple functional assignments are 532/42, 136/12, and 87/10 for All, Firmicutes, and Cyanobacteria, respectively.
Only COGs with functional assignments were considered.
The assignment of ESTs to subcategories within FunCat 20 (Cellular transport) included 53.5 standardized functional assignments.
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