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Our understanding of fungal phylogeny also has advanced dramatically over the past 20 years by analyses of multiple DNA loci and increased taxon sampling.
This unified concept also allows the use of diverse lines of evidence to test species boundaries (e.g., monophyly at one or multiple DNA loci, morphological diagnosability, ecological distinctiveness, etc. [ 28, 29]) and is the species concept we adopt here.
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Many molecular phylogenetic analyses rely on DNA sequence data obtained from single or multiple loci, particularly mitochondrial DNA loci.
Multiple insertions of RTEs in close proximity within individual microsatellite DNA loci (DQ225299, AY785062) are also shown.
The patterns of multiple interactions at the HLA loci may be coupled with complex looping structures bringing together multiple DNA regions.
Parentage was inferred using 17 microsatellite DNA loci.
Multiple DNA sequence comparisons were done with publicly available ClustalW2 software (http://www.ebi.ac.uk/Tools/clustalw2/index.html) against the NCBI human TPPI mRNA sequence (locus NM_000391).
Furthermore, Helitrons are often chimeric constructs that have acquired DNA from multiple independent loci, which may occur by a step-wise addition of novel 5′- and 3′-ends that are compatible with the minimal requirements for functioning during RCR.
For genes with multiple CpG loci measured, percent DNA methylation at individual loci as well as average percent DNA methylation were analyzed.
Subsequently, changes in methylation at multiple imprinted loci in leukocyte DNA, as observed in some cases of BWS and SRS, remain useful for diagnosis of imprinting disorders [42].
The data consist of DNA sequences from multiple neutral loci, with one sequence from each species at each locus.
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