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Dividing a task across multiple computational resources incurs an overhead, thus limiting the theoretical improvement in performance as more resources are added.
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The hierarchy of parallelism includes heterogeneity within a single instance of the problem, homogeneity among subsets of users within a problem domain, and multiple problem domains which share computational resources.
The proposed solution allows multiple users to access GPUs computational resources online within a reasonable time (in a range from a few seconds to several minutes).
Emerging GPUs offer multiple parallelism levels; however, properly managing their computational resources becomes a very challenging task.
In contrast, the DDBJ Pipeline processes multiple datasets of terabase size using the computational resources of NIG supercomputers (the system is introduced in http://sc.ddbj.nig.ac.jp/index.php/en/).
If high performance computational resources are available, especially with multiple processing cores, recent versions of MAFFT and T-Coffee can deliver faster alignments compared to Probalign and Probcons.
Our study is the first to perform high-throughput multiple-protein docking, and this work requires large computational resources.
The computational resources were provided by Computer and Networking Center, National Taiwan University.
The multiple scales dramatically increase the requirements, in terms of computational resources, because of the need of performing large scale simulations with the proper small-scales resolution.
This simplification allows for a systematic exploration of motion along multiple normal mode directions, achieving large amplitudes, using modest computational resources.
This quantitative procedure can provide rigorous and consistent estimates of volcanic ash hazard across multiple spatial scales in less time and using far fewer computational resources than those needed to up-scale conventional ash dispersal modelling.
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