Cabernet Sauvignon, clone 8 vines located in the Tyree Teaching Vineyard, UC Davis, CA. Berries were sampled from multiple clusters and from different positions in individual clusters in order to ensure a representative sample.
Jawed vertebrates also have multiple clusters resulting from several rounds of genome-duplication events that occurred early in the evolution of vertebrates and some specific lineages.
Even though the locations of the multiple clusters were obtained from a factor analysis of the activation in response to the presentation of printed words, many of the factor-related locations have previously been shown to activate in perceptual or motor tasks that do not involve verbal stimuli but appear to entail the same factor.
Multiple probe or probe sets targeting a single UniGene cluster or single probe or probe sets targeting multiple clusters were removed from consideration.
The study found that often multiple clusters of CpGs from CpGcluster were substrings of one large CGI detected by the Takai and Jones algorithm.
The reason for this likely lies in the better discoverability in the network generated by matrix factorization, which facilitates retrieving nodes from multiple clusters.
The key differences between these tools and Hammock are (i) Hammock starts the iterative procedure from multiple clusters, so it performs multiple database (the sequence pool) searches in parallel; (ii) Hammock starts the iterative procedure from clusters of sequences, not from a single sequence and (iii) Hammock performs the merging step.
Nevertheless, we find five rat strains that showed contribution from multiple clusters in the fastStructure analysis (group 'm') of which one (WKY/Gla) shows a genomic distribution of the clusters #1 (WKY) and #6 (SHR), which is in line with its known breeding origin [ 11, 25].
Additionally, we evaluated the ability of our model to capture multiple cluster assignments from artificial data.
However, one node can be covered by multiple cluster balls from the upper levels.
