Sentence examples for multiple assemblies using from inspiring English sources

To ensure a high quality assembly and to reduce the number of chimeric contigs, multiple assemblies using different k-mer values were generated as described [ 29].

For optimizing the de novo assembly, the method of additive multiple-k [ 12] was used to combine the properties of multiple assemblies using different k-mers (19 43).

We used the subtractive multiple- k method of Surget-Groba and Montoya-Burgos (2010) and constructed multiple assemblies using a range of k-mer lengths (25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, and 69).

In order to further expand the assembly set, we performed multiple k-mer assemblies using an additional assembly program, Velvet [ 31].

> -wrap-foot> In this article, we have presented Ragout, a package for improving assemblies using multiple complete references.

The Ns inserted in many of the scaffolds also made it difficult to find a suitable similarity cutoff for merging scaffolds from multiple single k-mer SOAPdenovo-Trans assemblies using cap3.

Both default multiple- k assembly pipelines by Oases and Trans-ABySS produced higher percentages of chimeras as compared to single k-mer assemblies using the same software packages.

The pipeline is capable of enhanced or manually assisted reference-based assembly using multiple assemblers and modes; gene predictor combining; and functional annotation of genes and gene products.

Initially, multiple assemblies were generated using different values of k and assessed using assembly quality statistics such as N50, maximum contig length, number of contigs in the assembly and the total amount of bases in the assembly.

Most manufacturing methods are based on bulk optical assembly using multiple technologies that require different assembly steps and expertise.

Most of them rely on the assembly using multiple copies of single type of motifs and a few sophisticated nanostructures have been engineered by co-assembling multi-types of DNA tiles simultaneously.