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We downloaded multiple annotation versions of some organisms, i.e., two versions of M. grisea and two of F. graminearum and used their combinations to construct trees.
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Annotation of the rhesus GeneChip® is under continuous revision with large percentages of probesets under multiple annotation systems having undergone multiple reassignments between March 2007 and November 2008.
These sequences were analyzed through multiple annotation modules, including repetitive sequence annotation, gene prediction, protein function and domain structure annotation.
Unlike many annotation tools, dbWFA makes it possible to query multiple annotation systems simultaneously.
Evidence from multiple annotation tracks suggests a strong regulatory activity.
After selecting a species, the user selects a genome assembly version and a gene annotation version (multiple versions can coexist).
According to Ensembl annotation (version 55), 8886 genes have multiple alternatively spliced transcripts.
GO groups were adopted from the Physcomitrella patens genome annotation version 1.6.
Microarray probes were matched to gene identifiers using the CDF array annotation (version 18) provided by the University of Michigan microarray© lab56.
These FSTs indicate mutations in 29,624 (53.1 %) of 55,801 genes identified by the rice genome annotation project (RGAP) annotation version 7 (Fig. 1).
Aedes aegypti genome version 3.2 and annotation version 3.2, An. stephensi genome version 2 and annotation 2.2 were used.
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