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Because gene names are constantly evolving, multiple annotation tables are searched for relevant information on the input term.
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If users upload multiple files, then the annotation tables for each file are listed in separate tabs.
Probes were re-annotated using the ReMOAT annotation tables [ 20].
Evaluation of Gene Ontology terms associated with the differentially regulated genes was only moderately informative, since the genes belonged to multiple annotation categories that only rarely overlapped (Additional file 3: Table S1).
In Table 2, we show the effects of combining multiple annotation resources (from which annotations are transferred) for the updated PFPDB in terms of the sequence coverage and the GO coverage.
Annotation of the rhesus GeneChip® is under continuous revision with large percentages of probesets under multiple annotation systems having undergone multiple reassignments between March 2007 and November 2008.
These sequences were analyzed through multiple annotation modules, including repetitive sequence annotation, gene prediction, protein function and domain structure annotation.
Unlike many annotation tools, dbWFA makes it possible to query multiple annotation systems simultaneously.
Evidence from multiple annotation tracks suggests a strong regulatory activity.
The annotation tables contain annotations from several sources, including Redfly, Flybase and the Gene Ontology.
Machine readable annotation files and annotation tables for all RNAz predictions can be found at [ 65].
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