Here, we present D-Tailor, an extendable framework supporting integration of multiple sequence analysis tools to mine and design biological sequences.
It also contains a well-curated and annotated genome browser complete with Mu and Ac/Ds insertional mutations (see below) and multiple expression analysis tools.
We used multiple computational analysis tools to quantify gene and transcript isoform expression levels and to analyse differential expression between CD4+ T cell subtypes.
D-Tailor permits the seamless integration of multiple sequence analysis tools into a generic Monte Carlo simulation that evolves sequences toward any combination of rationally defined properties.
In addition to integrating the above information to improve the accuracy of T3SE prediction, BEAN 2.0 also provided multiple functional analysis tools to assist users in annotating putative T3SEs conveniently.
The idea behind MultiRankSeq's algorithm for integrating the results from multiple RNAseq analysis tools is based on the same analytic principle as the weighted flexible compound covariate method (WFCCM) [ 29].
It provides a generic interface to integrate multiple sequence analysis tools into a heuristic Monte Carlo search procedure capable of evolving sequences towards pre-defined design targets (Fig. 1).
By using standard formats, we have enabled FluMap to be adaptable to multiple network analysis tools such as Cytoscape or to simulation by employing user-supplied kinetic laws and SBML-compliant simulators.
Furthermore, this study is robust since it utilizes multiple statistical analysis tools to examine the single gene as well as gene-gene or gene-cigarette smoking combination effects in relation to PCA risk.
Multiple MS data analysis tools are available (Dunn et al., 2012), including widely used open source software such as mzMine (mzmine.sourceforge.net), mzMatch (mzmatch.sourceforge.net) and XCMS (metlin.scripps.edu), and commercial software such as SIEVE (www.thermo.com), MassHunter (www.chem.agilent.com) and MarkerLynx (www.waters.com).
