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In every iteration, only one stochastic transition is generated, resulting in multiple alternative sequences of molecular interactions.
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For many clinical procedures there are multiple alternative task sequences that can be performed.
Sequencing revealed multiple alternative splicing products for both the known and extended 3'UTR of Olfml1 as shown in Additional file 5, Figure S3.
High-scoring sequences will have multiple alternative alignments that should exceed the cap by variable amounts, so arbitrarily choosing one of those alignments no longer makes sense.
Analysis of expressed sequence tags (ESTs) indicates that transcripts produced from this gene (Fig. 1A) are alternatively spliced, utilizing multiple alternative exons and, in exon 5, alternative splice donor sites (Fig. 1B).
Detailed sequencing analysis also revealed multiple alternative splicing products for the Olfml1 3'UTR.
The existence of specific intronic sequence elements linked to multiple alternative splicing decisions is intriguing and suggests that these elements might have some specialized regulatory role during splicing.
Generation of siRNAs from the ends of P4R2 RNAs, rather than from internal sequences, leads to the prediction that each P4R2 RNA sequence has limited capacity to specify multiple alternative siRNAs.
For these datasets, we selected one representative peptide sequence with the largest length among multiple alternative splicing variants for each gene.
In the majority of these cases, the LTR acts as a gene promoter, is often one of multiple alternative promoters and usually does not alter the coding sequence.
If a given gene had multiple alternative splicing variants, only the one with the longest coding sequence was used.
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